SMOKE Installation Notes - Revision history

Zac at 02:54, 9 December 2021

2021-12-09T02:54:23Z

Zac: /* Cluster 1 Installation */

2021-12-09T02:52:30Z

‎Cluster 1 Installation

Zac: /* Compile SMOKE */

2021-12-09T02:51:37Z

‎Compile SMOKE

Zac: /* IOAPI */

2021-12-09T02:42:00Z

‎IOAPI

Zac at 02:39, 9 December 2021

2021-12-09T02:39:50Z

Zac at 22:10, 8 December 2021

2021-12-08T22:10:11Z

Zac: /* NetCDF */

2021-12-08T21:58:42Z

‎NetCDF

Zac at 20:29, 8 December 2021

2021-12-08T20:29:47Z

Zac: Created page with "= Install Libraries = == IOAPI == Download the latest I/O API library from the CMAS Center, untar in the desired location Go to the source code location, copy the makefile..."

2021-12-08T20:03:02Z

Created page with "= Install Libraries = == IOAPI == Download the latest I/O API library from the CMAS Center, untar in the desired location Go to the source code location, copy the makefile..."

New page

= Install Libraries =

== IOAPI ==

Download the latest I/O API library from the CMAS Center, untar in the desired location

Go to the source code location, copy the makefile template, and set environment variables to compile for your system (e.g., Intel fortran):

tar xvzf
cd ioapi-3.2-20200828/ioapi
cp Makefile.nocpl Makefile
setenv BIN Linux2_x86_64ifort
mkdir /t10/apps/IOAPI/ioapi-3.2-20200828/$BIN
make

A couple of notes:
* Edit the Makefile to set the installation directory BASEDIR
* You need to manually create the output directory because this feature isn't working in the I/O API install package

== NetCDF ==

Use netCDF C version 4.6.1 and Fortran version 4.2 (tar files available here: /t5/apps/NETCDF)

First untar and compile the C version of netCDF

tar xvzf netcdf-4.6.1.tar.gz
cd netcdf-4.6.1
setenv CC icc
setenv FC ifort
./configure --prefix /t10/apps/NETCDF//t10/apps/NETCDF/netcdf-4.6.1/Linux2_x86_64ifort_v2021.4.0 --disable-netcdf-4
make

← Older revision		Revision as of 02:54, 9 December 2021
Line 96:		Line 96:
	! Add the following line		! Add the following line
	INTEGER, PARAMETER :: M3TYPES( NM3TYPES ) = (/ M3INT, M3REAL, M3DBLE, M3INT8 /)		INTEGER, PARAMETER :: M3TYPES( NM3TYPES ) = (/ M3INT, M3REAL, M3DBLE, M3INT8 /)
		+
		+	Manually change the SMOKE exec directory to note where it was compiled
		+
		+	cd /t10/apps/SMOKE/SMOKEv4.8.1/subsys/smoke
		+	mv Linux2_x86_64ifort Linux2_x86_64ifort.cluster1

← Older revision		Revision as of 02:52, 9 December 2021
Line 6:		Line 6:

	Install Intel Compiler. Two components: [https://www.intel.com/content/www/us/en/develop/documentation/installation-guide-for-intel-oneapi-toolkits-linux/top/installation/install-using-package-managers/yum-dnf-zypper.html One API Base Toolkit & One API HPC Toolkit]		Install Intel Compiler. Two components: [https://www.intel.com/content/www/us/en/develop/documentation/installation-guide-for-intel-oneapi-toolkits-linux/top/installation/install-using-package-managers/yum-dnf-zypper.html One API Base Toolkit & One API HPC Toolkit]
		+
		+	Add the following lines to your .cshrc
		+
		+	if ( ! $?intel_sourced ) then
		+	setenv intel_sourced "yes"
		+	bash -c 'source /opt/intel/oneapi/setvars.sh ; exec csh'
		+	endif

	== Libraries ==		== Libraries ==

← Older revision		Revision as of 02:51, 9 December 2021
Line 75:		Line 75:
	SMK_HOME = /t10/apps/SMOKE/SMOKEv4.8.1		SMK_HOME = /t10/apps/SMOKE/SMOKEv4.8.1
	BIN = Linux2_x86_64ifort		BIN = Linux2_x86_64ifort
		+
		+	Compile using the Makefile in the same directory
		+
		+	make \|& tee make.cluster1.log
		+
		+	Note: the intel compiler didn't like the syntax in one of the include files of the 20200828 version of the I/O API
		+
		+	vi /t10/apps/SMOKE/SMOKEv4.8.1/ioapi/ioapi/fixed_src/PARMS3.EXT
		+	! Original code, comment out these lines
		+	! INTEGER, PARAMETER :: M3TYPES( NM3TYPES ) = &
		+	! & (/ M3INT, M3REAL, M3DBLE, M3INT8 /)
		+
		+	! Add the following line
		+	INTEGER, PARAMETER :: M3TYPES( NM3TYPES ) = (/ M3INT, M3REAL, M3DBLE, M3INT8 /)

@@ Line 5: / Line 5: @@
    sudo yum install m4
-Install Intel Compiler [https://www.intel.com/content/www/us/en/develop/documentation/installation-guide-for-intel-oneapi-toolkits-linux/top/installation/install-using-package-managers/yum-dnf-zypper.html One API Base Toolkit One API HPC Toolkit]
+Install Intel Compiler. Two components: [https://www.intel.com/content/www/us/en/develop/documentation/installation-guide-for-intel-oneapi-toolkits-linux/top/installation/install-using-package-managers/yum-dnf-zypper.html One API Base Toolkit & One API HPC Toolkit]
 == Libraries ==

@@ Line 1: / Line 1: @@
 == IOAPI ==
 Download the latest I/O API library from the CMAS Center, untar in the desired location
@@ Line 18: / Line 25: @@
 * You need to manually create the output directory because this feature isn't working in the I/O API install package
-== NetCDF ==
+=== NetCDF ===
 Use netCDF C version 4.6.1 and Fortran version 4.2 (tar files available here: /t5/apps/NETCDF)
@@ Line 45: / Line 52: @@
   make install
-= Compile SMOKE =
+== Compile SMOKE ==
-Download and install the source code per the instructions in the SMOKE manual
+ SMK_HOME = /t10/apps/SMOKE/SMOKEv4.8.1

@@ Line 14: / Line 14: @@
 Go to the source code location, copy the makefile template, and set environment variables to compile for your system (e.g., Intel fortran):
-   tar xvzf
+   tar xvzf 20200828.tar.gz
    cd ioapi-3.2-20200828/ioapi
    cp Makefile.nocpl Makefile

@@ Line 29: / Line 29: @@
   setenv CC icc
   setenv FC ifort
-  ./configure --prefix $C_NCF_OUT --disable-netcdf-4
+  ./configure --prefix $C_NCF_OUT --disable-netcdf-4 --disable-dap
   make
   make install
@@ Line 44: / Line 44: @@
   make
   make install
-−
 = Compile SMOKE =
 Download and install the source code per the instructions in the SMOKE manual